Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P35424

Metabolite ID
P35424
Deionized mass
104.0103 Da
Average m/z
105.0177
Average RT
17.7926
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.742e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.131e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.087e-12
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)6.924e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.364e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.264e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)8.087e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.742e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.054e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.281e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)1.714e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.601e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.234e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.217e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.996e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.904e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.996e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.996e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.904e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.052e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.35e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.575e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.045e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.915e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.915e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.915e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.915e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.484e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.592e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.971e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.131e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.01e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.157e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.179e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.376e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.179e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.179e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.07e-14
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.133e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.602e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)8.665e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.087e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.087e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.202e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.008e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.327e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.984e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.938e-11