Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34988

Metabolite ID
P34988
Deionized mass
659.2766 Da
Average m/z
660.2798
Average RT
17.6004
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.771e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)2.645e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.885e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.953e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.371e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.471e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.014e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.338e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.771e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.518e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.809e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.974e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.974e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.974e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.974e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.54e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.484e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.575e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)8.024e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)2.128e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)1.694e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.69e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.226e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.746e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.423e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.929e-11
Glyma.18G044600 hypothetical protein AT4G10710:SPT16:global transcription factor C 1Chr18:3846050–3851668 (+)2.712e-11
Glyma.18G044700 hypothetical protein NA 1Chr18:3846777–3847566 (+)2.712e-11
Glyma.18G044800 hypothetical protein NA 1Chr18:3854125–3856926 (+)2.712e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)1.346e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)6.15e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.006e-11
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)6.604e-11
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)6.604e-11
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)6.604e-11
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)6.604e-11
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)6.604e-11
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)6.604e-11
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)6.604e-11
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)6.604e-11
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)6.604e-11
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)6.604e-11
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)6.604e-11
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)6.604e-11
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)6.604e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.32e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.84e-11