Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34869

Metabolite ID
P34869
Deionized mass
657.2688 Da
Average m/z
658.2692
Average RT
17.5595
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)7.961e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.446e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.013e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.067e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)9.299e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.106e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.998e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.288e-12
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.288e-12
Glyma.01G019300 hypothetical protein NA 1Chr01:1865692–1868540 (-)1.089e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.61e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.61e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.074e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.287e-11
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)3.498e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.227e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.517e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.263e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.616e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.007e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.318e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.318e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.774e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.57e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.57e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.57e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.67e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.811e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.811e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.664e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.32e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.592e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)3.849e-12
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)4.195e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)3.849e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.787e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.805e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.394e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.394e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.394e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.394e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.925e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.769e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.769e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.769e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.027e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.027e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.981e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.521e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.521e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.985e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.96e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.131e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.936e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.936e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.936e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)2.53e-11
Glyma.14G057600 hypothetical protein NA 1Chr14:4604289–4605563 (+)8.938e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)8.365e-11
Glyma.16G153800 hypothetical protein AT5G18110:NCBP:Putative cap-binding protein 1Chr16:31441158–31444423 (+)1.923e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.687e-13
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)5.76e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.084e-11
Glyma.18G195000 hypothetical protein NA 1Chr18:46858462–46861415 (+)5.195e-11
Glyma.18G195500 hypothetical protein NA 1Chr18:46967195–46981775 (+)2.534e-12
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)4.74e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.623e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.161e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.161e-13
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)8.475e-11
Glyma.19G126000 CYP98A2 cytochrome P450 98A2 AT2G40890:CYP98A3:cytochrome P450, family 98, subfamily A, polypeptide 3 1Chr19:38430097–38435201 (-)7.136e-11
Glyma.20G004900 Probable xyloglucan galactosyltransferase GT17 AT1G68470:AT1G68470:Exostosin family protein 1Chr20:474697–477611 (+)4.89e-11