Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34856

Metabolite ID
P34856
Deionized mass
229.1390 Da
Average m/z
230.1449
Average RT
17.5544
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.856e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)4.595e-14
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)9.014e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.014e-13
Glyma.17G215200 hypothetical protein NA 2Chr17:36125880–36142936 (+)5.776e-11
Glyma.20G013100 hypothetical protein NA 2Chr20:1134080–1135710 (-)3.821e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.666e-14
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)1.828e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)6.671e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.75e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.287e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.419e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.583e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.873e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.111e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.111e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.41e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.149e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.149e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.149e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)3.862e-12
Glyma.05G221800 hypothetical protein NA 1Chr05:40120284–40122468 (-)1.778e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.687e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.724e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.724e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.724e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.724e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.289e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.253e-15
Glyma.05G236800 hypothetical protein AT1G23200:AT1G23200:Plant invertase/pectin methylesterase inhibitor superfamily 1Chr05:41318276–41321678 (+)3.576e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.014e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.014e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.639e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.014e-13
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.047e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.234e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.234e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.586e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.586e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.255e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.255e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.197e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.197e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.197e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.498e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.498e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.498e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.73e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)8.86e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.04e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.04e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.036e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.036e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)1.151e-13
Glyma.17G212100 hypothetical protein NA 1Chr17:35010757–35014587 (+)5.777e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)5.776e-11
Glyma.17G213300 hypothetical protein NA 1Chr17:35589559–35592664 (+)5.776e-11
Glyma.17G213600 hypothetical protein AT4G32060:AT4G32060:calcium-binding EF hand family protein 1Chr17:35740625–35746554 (-)5.776e-11
Glyma.17G213700 hypothetical protein AT5G11090:AT5G11090:serine-rich protein-like protein 1Chr17:35767502–35768989 (-)5.776e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)5.776e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.776e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)6.43e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.12e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.759e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.119e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.836e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)6.865e-11