Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34789

Metabolite ID
P34789
Deionized mass
440.0684 Da
Average m/z
441.0768
Average RT
17.5273
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)3.09e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.012e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.09e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.064e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)4.074e-20
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.836e-18
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.917e-11
Glyma.01G001300 hypothetical protein AT2G07050:CAS1:cycloartenol synthase 1 1Chr01:227021–237987 (-)4.885e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.462e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.012e-13
Glyma.01G047100 hypothetical protein AT1G14250:AT1G14250:GDA1/CD39 nucleoside phosphatase family protein__AT1G14230:AT1G14230:GDA1/CD39 nucleoside phosphata… 1Chr01:5503526–5511806 (+)2.315e-11
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)4.577e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)4.577e-11
Glyma.01G047600 hypothetical protein NA 1Chr01:5545562–5545978 (+)1.048e-11
Glyma.03G042600 hypothetical protein AT5G01720:AT5G01720:RNI-like superfamily protein 1Chr03:5393167–5398284 (+)9.281e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.755e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)8.469e-15
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.626e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)9.242e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)8.436e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)7.536e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)7.536e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)7.536e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)7.536e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.294e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.294e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.294e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.152e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.257e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.608e-16
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)2.562e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)9.497e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.363e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.233e-13
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)1.456e-15
Glyma.12G067100 FNSII-2 NA 1Chr12:4919960–4922998 (+)2.644e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.65e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.65e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.705e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.705e-16
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.115e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.443e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.671e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.77e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.917e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.183e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.183e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.24e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.392e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)2.417e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.18e-16
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.2e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.272e-13
Glyma.19G005800 Polyribonucleotide nucleotidyltransferase 2, mitochondrial AT5G14580:AT5G14580:polyribonucleotide nucleotidyltransferase 1Chr19:522587–531382 (-)5.936e-15
Glyma.19G005900 Phosphoenolpyruvate/phosphate translocator 2, chloroplastic AT3G01550:PPT2:phosphoenolpyruvate (pep)/phosphate translocator 2 1Chr19:537642–545561 (+)1.398e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.842e-16
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.874e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.874e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.306e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.305e-16
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)4.243e-11