Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34590

Metabolite ID
P34590
Deionized mass
530.1790 Da
Average m/z
531.1851
Average RT
17.4642
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)4.092e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.576e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.389e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.51e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.708e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.637e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.691e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.49e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)5.789e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.46e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.235e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.924e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)6.986e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.104e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.84e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.84e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.84e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.84e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.322e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.455e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.833e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.725e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.352e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.352e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.984e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.984e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.984e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.813e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.028e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.604e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.776e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.604e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.604e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)8.551e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)8.551e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.625e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.647e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.761e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.761e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.184e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.742e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.416e-12