Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34322

Metabolite ID
P34322
Deionized mass
459.2566 Da
Average m/z
460.2665
Average RT
17.3676
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.238e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.008e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.663e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.663e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.469e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.6e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.499e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.963e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.775e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.848e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.404e-12
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)4.357e-11
Glyma.01G231900 hypothetical protein AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein 1Chr01:55869836–55872417 (+)6.863e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.878e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.821e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.016e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)7.135e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.212e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.593e-11
Glyma.05G122300 hypothetical protein AT3G60360:EDA14:embryo sac development arrest 14 1Chr05:31585853–31588967 (-)3.147e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.665e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.668e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.416e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.54e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.54e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.009e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.036e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.036e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.036e-14
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.883e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.234e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.059e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.424e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.512e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.512e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.512e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.836e-12
Glyma.06G260500 hypothetical protein NA 1Chr06:44554415–44557883 (+)3.914e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.652e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.831e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)2.205e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.005e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.136e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.708e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)9.901e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.568e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)9.855e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)9.855e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)9.855e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.496e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.336e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.417e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.417e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.417e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.417e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.206e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.206e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.206e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)9.949e-11
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)9.949e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.315e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.315e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)7.996e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.108e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.108e-13
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)6.047e-12
Glyma.13G067900 hypothetical protein NA 1Chr13:16787469–16789119 (+)4.162e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.143e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.143e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.663e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.791e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.356e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.687e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.112e-16
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.656e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.656e-11
Glyma.14G133600 hypothetical protein AT4G31390:ACDO1:Protein kinase superfamily protein 1Chr14:23182134–23193763 (+)4.092e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.499e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.185e-12
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)5.013e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.596e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.48e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.834e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.53e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.848e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.981e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.981e-16
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.512e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.18e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.252e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)2.822e-12
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)2.81e-11