Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34212

Metabolite ID
P34212
Deionized mass
583.2266 Da
Average m/z
584.2365
Average RT
17.3237
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)6.832e-14
Glyma.07G013800 hypothetical protein AT5G35790:G6PD1:glucose-6-phosphate dehydrogenase 1 3Chr07:1073133–1082652 (+)3.428e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)3.236e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.397e-12
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)1.057e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)3.175e-13
Glyma.07G010200 hypothetical protein NA 2Chr07:753451–763749 (-)1.986e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.504e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.817e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.494e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.494e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)6.495e-12
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)2.795e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)5.025e-12
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)5.025e-12
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)5.025e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.911e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.426e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.623e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)7.225e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.359e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.581e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)9.805e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.069e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)1.057e-11
Glyma.04G184900 hypothetical protein AT5G17990:TRP1:tryptophan biosynthesis 1 1Chr04:45438332–45443037 (-)3.164e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.389e-16
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)4.945e-12
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)4.945e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)9.494e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.811e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.662e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.662e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.334e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.879e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.822e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.389e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.065e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.065e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.065e-11
Glyma.06G289400 hypothetical protein AT2G20580:RPN1A:26S proteasome regulatory subunit S2 1A__AT4G28470:RPN1B:26S proteasome regulatory subunit S2 1B 1Chr06:47813934–47821512 (+)6.054e-11
Glyma.06G289600 hypothetical protein AT5G51740:AT5G51740:Peptidase family M48 family protein 1Chr06:47831855–47835534 (-)1.237e-11
Glyma.06G289900 hypothetical protein AT2G20590:AT2G20590:Reticulon family protein 1Chr06:47861573–47865518 (-)6.561e-12
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)4.508e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.603e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.378e-16
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.603e-16
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.603e-16
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.378e-16
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.644e-13
Glyma.07G010400 hypothetical protein AT3G13750:BGAL1:beta galactosidase 1 1Chr07:783384–789811 (-)3.428e-11
Glyma.07G010500 hypothetical protein AT1G55150:RH20:DEA(D/H)-box RNA helicase family protein 1Chr07:803172–810263 (+)1.986e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)1.986e-11
Glyma.07G010800 hypothetical protein NA 1Chr07:824697–827823 (-)1.986e-11
Glyma.07G010900 hypothetical protein AT1G55180:PLDEPSILON:phospholipase D alpha 4 1Chr07:830443–834361 (-)1.986e-11
Glyma.07G011000 hypothetical protein NA 1Chr07:838965–841202 (+)3.428e-11
Glyma.07G011100 hypothetical protein AT3G13700:AT3G13700:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr07:843406–847022 (+)1.986e-11
Glyma.07G011200 hypothetical protein AT5G49010:SLD5:DNA replication protein-like protein 1Chr07:847783–850968 (-)1.986e-11
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)3.428e-11
Glyma.07G011600 hypothetical protein AT3G21250:ABCC8:multidrug resistance-associated protein 6 1Chr07:885910–891586 (+)1.986e-11
Glyma.07G012500 hypothetical protein AT1G51720:AT1G51720:Amino acid dehydrogenase family protein 1Chr07:977060–987360 (+)3.428e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.003e-14
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.003e-14
Glyma.07G013700 hypothetical protein AT4G29990:AT4G29990:Leucine-rich repeat transmembrane protein kinase protein 1Chr07:1063337–1068561 (-)3.428e-11
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)2.43e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.771e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.771e-12
Glyma.07G096100 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr07:9005577–9010088 (+)2.061e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.598e-16
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.504e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.504e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.504e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.504e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.501e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.653e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.653e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.653e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.653e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.409e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.193e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.876e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.876e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.876e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.876e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.864e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.864e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.864e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.644e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.644e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.688e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.688e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.936e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.817e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.991e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.991e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.494e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.292e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.718e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.153e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.115e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.263e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.115e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.115e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.71e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.096e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.465e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)8.421e-15
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.98e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.98e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.112e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)2.704e-11
Glyma.18G252000 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr18:53874840–53885068 (-)7.971e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.363e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.748e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.363e-12