Overview Annotation GWAS Evidence Associated genes

P33925

Metabolite ID
P33925
Deionized mass
454.2500 Da
Average m/z
455.2573
Average RT
17.2098
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
15
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

15 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.018e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.134e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.134e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.134e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.888e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.06e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.774e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.061e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.061e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.783e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.289e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.289e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.886e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.092e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.054e-11