Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33883

Metabolite ID
P33883
Deionized mass
583.2270 Da
Average m/z
584.2314
Average RT
17.1914
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.619e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.036e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.918e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.041e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.427e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.932e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.501e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.451e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.451e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.2e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.263e-12
Glyma.03G041500 hypothetical protein NA 1Chr03:5249601–5251509 (-)1.295e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.752e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.594e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.407e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.407e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.407e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.814e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.345e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.438e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.686e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.686e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.036e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.041e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.041e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.041e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.041e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)5.771e-12
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)9.128e-12
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.11e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)2.034e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.693e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.693e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.724e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.123e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.938e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.231e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.042e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.042e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.042e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.042e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.551e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.838e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.441e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.441e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.441e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.659e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.659e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.514e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.576e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.932e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.234e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.501e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.313e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.313e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.451e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.37e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.139e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.485e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.139e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.139e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.616e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.036e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.036e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.301e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.343e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.3e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.468e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.46e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.28e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.28e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.701e-13
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.701e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.123e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.123e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.26e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.661e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.771e-15