Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33750

Metabolite ID
P33750
Deionized mass
154.1356 Da
Average m/z
155.1413
Average RT
17.1341
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
140
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

140 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)6.337e-16
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)9.343e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)8.838e-17
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)6.415e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.955e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.117e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.269e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.557e-15
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.635e-19
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.929e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.057e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.057e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)5.215e-12
Glyma.16G219000 hypothetical protein NA 2Chr16:37634112–37638596 (-)1.857e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.564e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.19e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.875e-12
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)8.012e-11
Glyma.02G303400 hypothetical protein AT5G56090:COX15:cytochrome c oxidase 15 1Chr02:47870385–47873480 (+)9.809e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.973e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.973e-11
Glyma.02G303800 hypothetical protein AT3G20910:NF-YA9:nuclear factor Y, subunit A9 1Chr02:47896187–47900062 (-)1.574e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.973e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.398e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)2.182e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)3.87e-11
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)4.247e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.653e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.361e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)9.343e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)9.343e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)9.343e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.122e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)5.363e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.15e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.009e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.782e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.782e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.948e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.342e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.342e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.342e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.284e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.205e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.197e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.129e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.129e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.129e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.129e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.463e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.452e-23
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.321e-17
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.834e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.834e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.834e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.593e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.755e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.755e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.755e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.075e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.075e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.028e-15
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.649e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.378e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)4.071e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.874e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)6.116e-13
Glyma.09G270300 hypothetical protein NA 1Chr09:48733890–48734902 (+)3.68e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.419e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.287e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.372e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.082e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.716e-11
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)8.911e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)1.557e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.537e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.537e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.147e-20
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.147e-20
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.408e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.408e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.041e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.759e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.245e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.245e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)1.245e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)3.606e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.955e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)6.905e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.623e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.623e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.057e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.644e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.644e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.644e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.463e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.809e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.308e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.066e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.927e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.709e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.129e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.798e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.469e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)2.869e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.586e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.117e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.117e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.117e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.52e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.16e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.325e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.312e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.565e-17
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.791e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)5.951e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.557e-15
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.635e-19
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.725e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)3.197e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)5.306e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.891e-15
Glyma.17G217900 hypothetical protein NA 1Chr17:36771760–36778616 (-)4.647e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.93e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)6.485e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)3.125e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.19e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.069e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.19e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.606e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.417e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.417e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.106e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)1.04e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)9.194e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)2.837e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)9.842e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.481e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.364e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.822e-14