Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33294

Metabolite ID
P33294
Deionized mass
484.1197 Da
Average m/z
485.1296
Average RT
16.9817
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.277e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.977e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.977e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.977e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.403e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.002e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.002e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.115e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.963e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.284e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.51e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)3.442e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.183e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.565e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.072e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.632e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.277e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.277e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.277e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.277e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.711e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.366e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.472e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.977e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.977e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.977e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.977e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.977e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.286e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.834e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.589e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.589e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.902e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.485e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.044e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.706e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.706e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.403e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.369e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.369e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.002e-14
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.548e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.542e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)7.418e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.115e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.28e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.049e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.28e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.28e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.069e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.434e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.719e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.331e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.527e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.972e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.403e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.403e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.542e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.387e-13
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 1Chr20:34832271–34839955 (-)6.11e-11