Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33215

Metabolite ID
P33215
Deionized mass
514.7222 Da
Average m/z
515.7279
Average RT
16.9508
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.793e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.22e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.468e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)6.702e-12
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 2Chr10:3270545–3283318 (-)4.938e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.199e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.866e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.767e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.582e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.516e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)1.108e-11
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)6.69e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)8.69e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.898e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.094e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.454e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.093e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.576e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.646e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.646e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.367e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.277e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.277e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.277e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.77e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.452e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.48e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.48e-14
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)8.213e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.807e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.444e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.413e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.87e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.371e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.225e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.225e-15
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)7.121e-13
Glyma.08G137800 hypothetical protein AT5G65100:AT5G65100:Ethylene insensitive 3 family protein__AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr08:10565832–10577477 (+)3.382e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.686e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.686e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.844e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.98e-11
Glyma.09G209200 hypothetical protein AT1G32160:AT1G32160:beta-casein (DUF760) 1Chr09:43361634–43365478 (-)6.979e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)5.382e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.784e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)5.714e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.146e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.146e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.592e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.592e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.592e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.07e-11
Glyma.14G204100 hypothetical protein AT1G06850:bZIP52:basic leucine-zipper 52 1Chr14:46886862–46890243 (-)8.846e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.992e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.172e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.468e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.468e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.501e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.164e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)7.882e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)1.171e-13
Glyma.18G299700 hypothetical protein AT2G43180:AT2G43180:Phosphoenolpyruvate carboxylase family protein 1Chr18:57755837–57757150 (-)1.918e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.158e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)5.894e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.287e-11