Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32963

Metabolite ID
P32963
Deionized mass
669.3322 Da
Average m/z
670.3372
Average RT
16.8596
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)1.131e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.306e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.198e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.288e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.7e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.694e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.694e-11
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)2.159e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.232e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.232e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.892e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.475e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.739e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.739e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.739e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.233e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.131e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.148e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.584e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.968e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.877e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.516e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.516e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.001e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.001e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.888e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.105e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.105e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.321e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.243e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.68e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.454e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.363e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.423e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.423e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)4.911e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.423e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.423e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)6.198e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)6.199e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)6.199e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.902e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.274e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.748e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.421e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.421e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.421e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)3.424e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)7.793e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.187e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.187e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.013e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.013e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.253e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.306e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.694e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.694e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.549e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.154e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)6.676e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.71e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.71e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.123e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.85e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.368e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.85e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.85e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.705e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.038e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.986e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.075e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.102e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.351e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)7.143e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.214e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)6.77e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.198e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.233e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.233e-12
Glyma.16G213000 hypothetical protein AT1G48380:RHL1:root hair initiation protein root hairless 1 (RHL1) 1Chr16:37118629–37125494 (-)6.927e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)5.175e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)5.175e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)5.175e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.43e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.608e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.88e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.88e-12
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)1.745e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)1.745e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)1.745e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.974e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.431e-11