Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32877

Metabolite ID
P32877
Deionized mass
256.0679 Da
Average m/z
257.0722
Average RT
16.8307
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
154
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

154 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.734e-11
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 4Chr01:50404781–50436297 (-)7.602e-12
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.686e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.992e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.689e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.223e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.5e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.365e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)6.868e-13
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)1.435e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.684e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.684e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.683e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.507e-15
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)2.388e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.79e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.812e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.647e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.622e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.689e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)9.189e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.102e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)2.707e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)5.309e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)3.005e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)3.005e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.28e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.916e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)7.602e-12
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)7.602e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.008e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.008e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.151e-14
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.66e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.793e-13
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.654e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.702e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.95e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.075e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)5.567e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.011e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.298e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.298e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.353e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.163e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.163e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.163e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)7.509e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.697e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.532e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.313e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.637e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.393e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.121e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.632e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.632e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.632e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.234e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.223e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.223e-13
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)9.348e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)9.348e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.87e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.87e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)9.347e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.969e-13
Glyma.08G211300 hypothetical protein AT1G52630:AT1G52630:O-fucosyltransferase family protein 1Chr08:17059736–17062962 (+)3.874e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.718e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.563e-14
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.708e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.259e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)5.086e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.684e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.684e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.684e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.684e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.684e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.786e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.786e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.786e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.786e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.746e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.57e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.445e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.604e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.604e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.604e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.604e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)6.012e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.409e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.051e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.363e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.363e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.363e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.154e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.899e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.677e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.677e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.582e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.582e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.581e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.05e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.008e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.861e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)5.557e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.897e-13
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.543e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.79e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.812e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.063e-11
Glyma.14G205100 hypothetical protein NA 1Chr14:47020646–47026852 (+)8.153e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.265e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)1.161e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)1.161e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)9.914e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)3.105e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.107e-20
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.207e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.594e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.495e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.751e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.348e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.193e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)7.638e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.211e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.858e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.905e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.428e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)4.708e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.365e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.594e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.594e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)1.978e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.106e-13
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)6.978e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.62e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.243e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.243e-15
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)2.083e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.734e-11
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)9.806e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)6.982e-12
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)4.284e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.504e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.098e-13
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)8.166e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)5.18e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)4.507e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.556e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)2.917e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.196e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.339e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.351e-13
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)9.975e-11