Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32580

Metabolite ID
P32580
Deionized mass
370.1352 Da
Average m/z
371.1439
Average RT
16.7221
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.98e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.408e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.267e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)1.044e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.484e-14
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)5.667e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.909e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.771e-15
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.605e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.424e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.391e-11
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)3.339e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.764e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.885e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.247e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.247e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.489e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.968e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.968e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.968e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.16e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.627e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.687e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.687e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.959e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.959e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.408e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.408e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.408e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.408e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.142e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.142e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.885e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.055e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.055e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.873e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.277e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.277e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.277e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.277e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)7.678e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.633e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.869e-11
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)8.845e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.446e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)7.676e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.034e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.981e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.98e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.981e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.981e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.172e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.616e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.248e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)7.856e-12
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)8.317e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.289e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.986e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)5.427e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.879e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.133e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.133e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)8.931e-11