Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32524

Metabolite ID
P32524
Deionized mass
178.0615 Da
Average m/z
357.1314
Average RT
16.7035
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.232e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.538e-11
Glyma.18G063200 hypothetical protein NA 2Chr18:5779244–5784529 (+)1.555e-14
Glyma.18G063400 hypothetical protein AT2G29940:ABCG31:pleiotropic drug resistance 3 2Chr18:5796259–5805903 (-)1.555e-14
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.668e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.538e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)6.724e-11
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)1.151e-12
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)1.151e-12
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)1.151e-12
Glyma.02G127000 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein 1Chr02:12798511–12806795 (+)7.26e-12
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)1.151e-12
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)1.151e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.62e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.157e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.25e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.649e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.649e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.649e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.874e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.362e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.362e-16
Glyma.12G109600 hypothetical protein AT4G03420:AT4G03420: 1Chr12:10403574–10408026 (+)1.842e-11
Glyma.12G109700 hypothetical protein AT1G03620:AT1G03620:ELMO/CED-12 family protein 1Chr12:10419034–10424716 (-)1.842e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.488e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.488e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.143e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.593e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.837e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.837e-12
Glyma.18G062800 hypothetical protein NA 1Chr18:5752483–5753187 (+)1.555e-14
Glyma.18G064000 hypothetical protein AT1G07230:NPC1:non-specific phospholipase C1 1Chr18:5847976–5851846 (-)1.555e-14
Glyma.18G064700 hypothetical protein AT5G58930:AT5G58930:__AT3G46990:AT3G46990:DUF740 family protein, putative (DUF740) 1Chr18:5893632–5895734 (+)1.555e-14
Glyma.18G065700 hypothetical protein AT2G29630:THIC:thiaminC 1Chr18:6008424–6016165 (+)1.555e-14
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)4.683e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.668e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.958e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.668e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.163e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.352e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.374e-15