Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31992

Metabolite ID
P31992
Deionized mass
459.1789 Da
Average m/z
460.1862
Average RT
16.5068
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
81
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

81 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.475e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.425e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.226e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.719e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.255e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.029e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.029e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.734e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.475e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.58e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.7e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.446e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.476e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.476e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.475e-11
Glyma.04G237700 hypothetical protein NA 1Chr04:50614236–50619957 (+)9.057e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.25e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.541e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.587e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.587e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)8.237e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.304e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.002e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.95e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.907e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.405e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.733e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.098e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.857e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.783e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.255e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.255e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.255e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.255e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)8.853e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.648e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.058e-25
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.165e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.165e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.165e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.165e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.186e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.501e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.544e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.484e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.939e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.939e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.939e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.939e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)4.417e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.425e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.587e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.564e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.564e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.029e-14
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.303e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.499e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.719e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.283e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.532e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.283e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.283e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.073e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.424e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.021e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)5.021e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.873e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.913e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.589e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.203e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.203e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.273e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.734e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.719e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)9.451e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.006e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.501e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)2.082e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.445e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.445e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.483e-12