Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31959

Metabolite ID
P31959
Deionized mass
1094.2878 Da
Average m/z
1095.2889
Average RT
16.4944
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G137600 hypothetical protein NA 3Chr16:29468438–29472890 (-)3.291e-19
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)1.675e-16
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)3.536e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.486e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.88e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.43e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.211e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.666e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.727e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.646e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.646e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.646e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.646e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.792e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.103e-12
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.671e-11
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)6.362e-12
Glyma.15G232700 hypothetical protein NA 1Chr15:43725286–43732237 (+)3.035e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)4.265e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.487e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.842e-11
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)1.238e-14
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)4.39e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.19e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.604e-18
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)4.761e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.595e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)3.64e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.388e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)9.388e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)7.629e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)7.629e-11
Glyma.18G042300 hypothetical protein AT1G66140:ZFP4:zinc finger protein 4 1Chr18:3586380–3589732 (+)5.07e-11
Glyma.18G042500 hypothetical protein NA 1Chr18:3597323–3598404 (-)5.07e-11
Glyma.18G264000 hypothetical protein AT3G29270:AT3G29270:RING/U-box superfamily protein 1Chr18:54933280–54938718 (+)3.995e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.993e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.267e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.765e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.535e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.324e-12
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)1.926e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.813e-11