Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31916

Metabolite ID
P31916
Deionized mass
854.3524 Da
Average m/z
855.3639
Average RT
16.4776
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.487e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.101e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.676e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.199e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.361e-12
Glyma.05G121100 hypothetical protein AT3G26420:ATRZ-1A:RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing pr… 1Chr05:31400610–31404065 (+)1.087e-11
Glyma.05G154000 hypothetical protein NA 1Chr05:34732843–34735376 (-)6.238e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.714e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.714e-12
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)6.233e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)2.516e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.263e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.675e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.263e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.263e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.675e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.579e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.716e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.631e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.025e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.958e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.141e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.525e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.225e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.225e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.294e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.577e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.042e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.596e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.022e-14
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.487e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.487e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.487e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.487e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.335e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.621e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)7.74e-11
Glyma.18G299700 hypothetical protein AT2G43180:AT2G43180:Phosphoenolpyruvate carboxylase family protein 1Chr18:57755837–57757150 (-)8.506e-13
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)1.004e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.971e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.97e-13