Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31869

Metabolite ID
P31869
Deionized mass
438.2417 Da
Average m/z
439.2481
Average RT
16.4639
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.398e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.932e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.59e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.59e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.59e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.617e-11
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)4.807e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)9.638e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)8.137e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)9.036e-12
Glyma.01G222700 hypothetical protein AT1G64060:RBOH F:respiratory burst oxidase protein F 1Chr01:55163018–55172994 (+)5.323e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.322e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.292e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.413e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.75e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.357e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.595e-13
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)9.403e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.59e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.59e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.59e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.59e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.59e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.538e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.12e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.538e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.538e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.985e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.146e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.11e-12
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)1.372e-13
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)2.266e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.797e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.445e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)4.196e-11
Glyma.16G208700 hypothetical protein AT5G26360:AT5G26360:TCP-1/cpn60 chaperonin family protein 1Chr16:36814752–36820289 (-)6.332e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)2.472e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.932e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.273e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.273e-12
Glyma.18G247000 hypothetical protein NA 1Chr18:53433846–53444848 (-)1.095e-12
Glyma.18G282000 hypothetical protein AT5G13300:SFC:ARF GTPase-activating protein 1Chr18:56284904–56294543 (+)7.224e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.029e-14