Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31845

Metabolite ID
P31845
Deionized mass
118.0777 Da
Average m/z
119.0847
Average RT
16.4577
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
127
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

127 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G140700 hypothetical protein NA 6Chr15:11520847–11522863 (-)5.555e-18
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.291e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)7.085e-17
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)1.209e-13
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 2Chr03:160599–165525 (+)7.52e-16
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.209e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.209e-13
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)1.209e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.779e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 2Chr14:6037810–6041899 (+)3.971e-19
Glyma.15G140500 hypothetical protein NA 2Chr15:11496139–11502209 (-)1.176e-11
Glyma.15G140800 hypothetical protein NA 2Chr15:11525771–11533394 (+)1.117e-13
Glyma.15G141200 hypothetical protein AT3G17000:UBC32:ubiquitin-conjugating enzyme 32 2Chr15:11557041–11559982 (-)8.824e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.408e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.553e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)6.203e-12
Glyma.18G218900 hypothetical protein NA 2Chr18:50562920–50573454 (+)5.599e-12
Glyma.18G219600 CRK59 cysteine-rich receptor-like protein kinase AT4G11470:CRK31:cysteine-rich RLK (RECEPTOR-like protein kinase) 31 2Chr18:50644125–50650550 (+)2.701e-13
Glyma.18G219900 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 2Chr18:50676002–50680129 (+)1.394e-14
Glyma.18G220000 hypothetical protein AT2G38670:PECT1:phosphorylethanolamine cytidylyltransferase 1 2Chr18:50680637–50690767 (-)9.616e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.291e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.032e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.032e-14
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.39e-12
Glyma.03G000100 hypothetical protein AT5G08400:AT5G08400:structural maintenance of chromosomes-like protein, putative (DUF3531) 1Chr03:9547–29036 (-)4.673e-12
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)2.278e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)2.278e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.404e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.28e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.518e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.242e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.932e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.322e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.322e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.322e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)5.451e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.269e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.269e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.474e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.159e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.485e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.882e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.308e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.449e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.412e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.412e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.326e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.919e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.448e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.873e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.209e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.948e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.052e-15
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.052e-15
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)1.016e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.491e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.068e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.438e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.331e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.813e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)3.572e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)9.471e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.047e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.047e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.452e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.452e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.213e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.083e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.083e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.651e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.651e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.779e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.901e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.901e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.901e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)6.659e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.245e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)9.075e-12
Glyma.13G224800 hypothetical protein NA 1Chr13:33748627–33756494 (-)1.823e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.021e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)3.137e-17
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.971e-19
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)6.026e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)4.502e-14
Glyma.14G073100 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr14:6138618–6142249 (-)4.478e-11
Glyma.14G073200 hypothetical protein NA 1Chr14:6151199–6153371 (-)4.478e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.181e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.321e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.321e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)3.073e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.935e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.02e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.935e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.935e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.744e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.797e-13
Glyma.15G138500 hypothetical protein NA 1Chr15:11270083–11275565 (-)1.065e-15
Glyma.15G139900 hypothetical protein AT3G06610:AT3G06610:DNA-binding enhancer protein-like protein 1Chr15:11427754–11431219 (+)2.26e-12
Glyma.15G140200 hypothetical protein AT5G49460:ACLB-2:ATP citrate lyase subunit B 2 1Chr15:11461119–11467932 (-)2.26e-12
Glyma.15G140900 hypothetical protein AT3G66658:ALDH22A1:aldehyde dehydrogenase 22A1 1Chr15:11538070–11545857 (-)1.112e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.211e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.533e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.26e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.548e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.936e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.244e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.121e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)7.356e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.712e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.291e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.179e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.179e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.082e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.082e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)8.587e-11
Glyma.18G205800 H-1 ferritin light chain AT5G01600:FER1:ferretin 1 1Chr18:48947662–48950635 (-)4.678e-12
Glyma.18G218700 hypothetical protein NA 1Chr18:50553919–50555110 (-)1.48e-11
Glyma.18G219000 hypothetical protein NA 1Chr18:50577209–50581396 (+)2.91e-11
Glyma.18G219100 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent__AT3G08590:iPGAM2:Phosphoglycerate mutase… 1Chr18:50589622–50595557 (-)5.599e-12
Glyma.18G220700 hypothetical protein AT4G00090:AT4G00090:Transducin/WD40 repeat-like superfamily protein 1Chr18:50749137–50759459 (+)5.943e-13
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.833e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.544e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.575e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.575e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.708e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.789e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.741e-13