Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31717

Metabolite ID
P31717
Deionized mass
438.0937 Da
Average m/z
439.1010
Average RT
16.4184
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.058e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.806e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.806e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.806e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.414e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.331e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.461e-11
Glyma.03G146400 hypothetical protein AT2G41970:AT2G41970:Protein kinase superfamily protein 1Chr03:36170481–36174029 (+)9.073e-11
Glyma.03G146500 hypothetical protein AT2G41960:AT2G41960:uncharacterized protein 1Chr03:36181312–36189521 (+)9.073e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.648e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.683e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.683e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.683e-11
Glyma.05G195400 hypothetical protein AT5G08740:NDC1:NAD(P)H dehydrogenase C1 1Chr05:37969923–37975033 (+)9.308e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)9.037e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.228e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.279e-11
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)3.51e-12
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)3.51e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.806e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.806e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.806e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.806e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.806e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)4.275e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.803e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.803e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.803e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.454e-13
Glyma.14G149900 hypothetical protein NA 1Chr14:32305914–32312520 (-)8.119e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.414e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)5.494e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)5.494e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.551e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.276e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.131e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)2.794e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.979e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.131e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.403e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.209e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.401e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.682e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.477e-11