Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31492

Metabolite ID
P31492
Deionized mass
484.2281 Da
Average m/z
485.2335
Average RT
16.3601
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 3Chr04:7187985–7192897 (+)2.482e-11
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)1.271e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.164e-13
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.165e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)3.015e-12
Glyma.05G162600 hypothetical protein NA 2Chr05:35376373–35378991 (+)1.229e-11
Glyma.05G163000 hypothetical protein NA 2Chr05:35404888–35408940 (+)1.229e-11
Glyma.05G163200 hypothetical protein AT4G18960:AG:K-box region and MADS-box transcription factor family protein 2Chr05:35435742–35444074 (+)3.423e-11
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 2Chr05:35593651–35600917 (+)1.49e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.125e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.791e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.363e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.363e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.621e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.676e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.825e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.021e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.444e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)4.355e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.859e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.859e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.443e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.322e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)6.198e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.982e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.334e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.091e-17
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)7.925e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.206e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.851e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.96e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.789e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.789e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.006e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.557e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.557e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.557e-12
Glyma.05G164600 hypothetical protein NA 1Chr05:35538676–35542389 (+)1.943e-11
Glyma.05G164800 hypothetical protein NA 1Chr05:35549831–35557199 (-)4.08e-14
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)5.887e-11
Glyma.05G165700 hypothetical protein NA 1Chr05:35623150–35631179 (-)4.804e-11
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)5.887e-11
Glyma.05G166800 SHOOT1 SHOOT1 protein AT1G55480:ZKT:protein containing PDZ domain, a K-box domain, and a TPR region 1Chr05:35731069–35735416 (+)1.125e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.384e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.143e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.903e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.874e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.927e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.737e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.737e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.737e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.737e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.95e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.085e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.727e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.744e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.744e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.805e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.118e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.805e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.805e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.118e-11
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)8.228e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.081e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.119e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.791e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.791e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.791e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.791e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)4.897e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.391e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.736e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.535e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.755e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.822e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.822e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.246e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.246e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.035e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)6.075e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.478e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.478e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.901e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.901e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.164e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.067e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.521e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.521e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.363e-15
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)6.01e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.306e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)3.006e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)9.169e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.676e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.825e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.907e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.907e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.672e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.941e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)9.342e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.579e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.579e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)9.45e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.048e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.048e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.143e-12
Glyma.16G075800 hypothetical protein AT4G19420:AT4G19420:Pectinacetylesterase family protein 1Chr16:7646131–7651379 (+)3.431e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.021e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.705e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.814e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)7.571e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.897e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.362e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.363e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)7.091e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)4.425e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)4.425e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)4.425e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.256e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.827e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.435e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.194e-12