Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30997

Metabolite ID
P30997
Deionized mass
576.1898 Da
Average m/z
577.1939
Average RT
16.1899
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.603e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.884e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.044e-12
Glyma.07G017600 hypothetical protein NA 2Chr07:1415837–1422680 (+)8.48e-12
Glyma.07G018100 hypothetical protein NA 2Chr07:1442368–1445430 (-)1.926e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.214e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.51e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.669e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.3e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.281e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.281e-12
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)3.397e-11
Glyma.07G010700 hypothetical protein AT3G13730:CYP90D1:cytochrome P450, family 90, subfamily D, polypeptide 1 1Chr07:817488–822276 (+)3.397e-11
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)6.145e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.773e-13
Glyma.07G016700 hypothetical protein NA 1Chr07:1343519–1350422 (-)5.652e-11
Glyma.07G017300 hypothetical protein NA 1Chr07:1397047–1398526 (-)5.652e-11
Glyma.07G018200 hypothetical protein AT1G05385:LPA19:photosystem II 11 kDa protein-like protein 1Chr07:1455309–1457197 (-)5.652e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.926e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)8.387e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.214e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.214e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.214e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.214e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)4.498e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.31e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.31e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.922e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.922e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.923e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.923e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.593e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.28e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.63e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.008e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.63e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.63e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.884e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.884e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.884e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.884e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)4.232e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.199e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.859e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.859e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.945e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)4.123e-11