Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30908

Metabolite ID
P30908
Deionized mass
132.0437 Da
Average m/z
133.0501
Average RT
16.1667
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.005e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)7.81e-12
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 2Chr03:38601039–38606103 (+)2.453e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)8.484e-12
Glyma.01G039600 hypothetical protein NA 1Chr01:4300332–4302844 (-)9.643e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.54e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.485e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)4.102e-11
Glyma.03G171200 hypothetical protein NA 1Chr03:38579274–38585023 (+)1.349e-11
Glyma.03G171400 hypothetical protein NA 1Chr03:38589307–38590274 (+)1.349e-11
Glyma.03G171600 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38610797–38616471 (+)1.349e-11
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)1.946e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.826e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.124e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.773e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.834e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.773e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.773e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.835e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.655e-12
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)9.24e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)9.24e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)5.839e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)5.839e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)7.443e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)4.51e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.372e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.372e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.372e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.372e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.787e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.176e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.561e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.561e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.541e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.858e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.541e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.541e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.676e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.245e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.407e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.407e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)4.076e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.41e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.334e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.678e-11
Glyma.18G218300 hypothetical protein AT5G01990:AT5G01990:Auxin efflux carrier family protein 1Chr18:50525980–50531206 (-)6.272e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.813e-11
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)7.175e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.9e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)4.674e-13
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)1.655e-13