Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30875

Metabolite ID
P30875
Deionized mass
290.2581 Da
Average m/z
291.2656
Average RT
16.1579
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
91
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

91 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)3.351e-11
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)7.848e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.568e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.329e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)8.619e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.416e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.993e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)3.576e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.644e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.409e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.049e-14
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.806e-15
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.568e-17
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.141e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)6.239e-13
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)6.239e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.194e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.16e-19
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.998e-18
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.424e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.4e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.06e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.518e-15
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.833e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.833e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.36e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.012e-14
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.29e-12
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)1.931e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.893e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.328e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.328e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.13e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.455e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.734e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.935e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.803e-14
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.587e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.155e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.617e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.937e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.937e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.937e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.937e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.032e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)2.719e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.894e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.025e-12
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)3.066e-11
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)9.641e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.472e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.409e-12
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)2.931e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.032e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.032e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.938e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.902e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.168e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.169e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.451e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.308e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.949e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)4.058e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.232e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.278e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.539e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.955e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)8.619e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.416e-13
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)6.714e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)6.714e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.016e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.226e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.993e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)4.42e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.362e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.332e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.086e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.086e-16
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.587e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.756e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.084e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.408e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.396e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)6.452e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)3.351e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.998e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.427e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.694e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.565e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)2.214e-12