Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30817

Metabolite ID
P30817
Deionized mass
476.7660 Da
Average m/z
477.7710
Average RT
16.1411
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 8Chr16:36856833–36863994 (-)6.078e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.876e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)2.033e-16
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.779e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)7.706e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.57e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.57e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.613e-12
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)2.813e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 2Chr16:36943073–36948828 (+)3.31e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)2.404e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)1.901e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.55e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.496e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.349e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.254e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.134e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.879e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.541e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.094e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.094e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.816e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.781e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)8.721e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)9.128e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.361e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.505e-12
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr09:1518046–1520807 (+)1.956e-11
Glyma.09G050900 hypothetical protein AT4G20050:QRT3:Pectin lyase-like superfamily protein 1Chr09:4447546–4450090 (+)2.221e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.779e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.779e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.784e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.784e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.57e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.57e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.686e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.708e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.846e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.488e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.613e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.629e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)8.372e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)8.372e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.478e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.761e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.387e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)8.684e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.684e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.973e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)8.55e-11
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)2.99e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.019e-14
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)1.163e-13
Glyma.16G208300 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36786114–36787686 (+)5.425e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)3.651e-11
Glyma.16G208700 hypothetical protein AT5G26360:AT5G26360:TCP-1/cpn60 chaperonin family protein 1Chr16:36814752–36820289 (-)1.014e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.658e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.779e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)3.74e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)3.74e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.16e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)1.215e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.432e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.432e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.07e-11
Glyma.20G009300 hypothetical protein NA 1Chr20:824176–827023 (+)1.382e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.786e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.582e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.616e-13
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)8.594e-11