Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30690

Metabolite ID
P30690
Deionized mass
505.2711 Da
Average m/z
506.2782
Average RT
16.1044
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.511e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)7.818e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.783e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.728e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.946e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.947e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)5.571e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.474e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.474e-14
Glyma.19G224000 hypothetical protein AT4G11160:AT4G11160:Translation initiation factor 2, small GTP-binding protein 2Chr19:47620374–47625859 (+)9.388e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.984e-12
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.002e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.166e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.166e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.832e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.2e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.68e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.444e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.258e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.258e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.258e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.16e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)6.336e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)3.967e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)4.105e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.493e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.662e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.297e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)9.495e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.334e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.571e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.096e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.818e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.696e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.062e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.062e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.474e-14
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)5.535e-12
Glyma.13G164300 hypothetical protein NA 1Chr13:27934139–27936052 (-)9.515e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.417e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.88e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.88e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.88e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.234e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.838e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.908e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)7.416e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)2.229e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.391e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.977e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.83e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.829e-12
Glyma.17G144000 hypothetical protein AT4G16760:ACX1:acyl-CoA oxidase 1 1Chr17:11759547–11765498 (-)9.796e-12
Glyma.17G153900 hypothetical protein AT5G46580:AT5G46580:pentatricopeptide (PPR) repeat-containing protein 1Chr17:12919733–12922117 (-)8.295e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.728e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)3.932e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.96e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.899e-12
Glyma.19G222200 hypothetical protein NA 1Chr19:47439424–47441508 (+)4.136e-11
Glyma.19G223300 hypothetical protein AT4G01610:AT4G01610:Cysteine proteinases superfamily protein__AT1G02305:AT1G02305:Cysteine proteinases superfamily prot… 1Chr19:47559538–47565331 (-)9.388e-11
Glyma.19G224100 hypothetical protein NA 1Chr19:47626692–47629861 (+)9.388e-11
Glyma.20G149900 hypothetical protein NA 1Chr20:38879682–38881629 (-)6.968e-11
Glyma.20G152300 hypothetical protein NA 1Chr20:39117272–39119456 (+)1.559e-11