Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30651

Metabolite ID
P30651
Deionized mass
308.0890 Da
Average m/z
617.1872
Average RT
16.0923
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.078e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.365e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.429e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.429e-11
Glyma.15G152400 hypothetical protein NA 2Chr15:12641790–12646649 (+)1.052e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.512e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)8.157e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)6.177e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.779e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.422e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.114e-15
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)4.512e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)4.512e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)4.512e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.041e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.572e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)8.371e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.683e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)4.593e-14
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)3.527e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)7.381e-12
Glyma.09G099500 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein 1Chr09:18099034–18105167 (+)4.513e-12
Glyma.09G099600 hypothetical protein NA 1Chr09:18100113–18100745 (+)4.513e-12
Glyma.09G099800 hypothetical protein NA 1Chr09:18134075–18134470 (-)4.513e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.015e-11
Glyma.11G122500 hypothetical protein AT1G49430:LACS2:long-chain acyl-CoA synthetase 2 1Chr11:9336389–9344401 (+)7.781e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)5.41e-11
Glyma.11G122900 hypothetical protein AT3G18940:AT3G18940:clast3-like protein 1Chr11:9362483–9366449 (-)1.467e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.123e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.818e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.818e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.818e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.477e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.477e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.582e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.491e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.491e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.429e-11
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)1.052e-12
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)1.052e-12
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)2.701e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)5.357e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.005e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)5.064e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)3.514e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)3.515e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.512e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.393e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.393e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)8.02e-11