Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30642

Metabolite ID
P30642
Deionized mass
596.2201 Da
Average m/z
597.2272
Average RT
16.0911
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.828e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.973e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.147e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.043e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.705e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)1.868e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.407e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.585e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.549e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.951e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.87e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.501e-26
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.746e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.635e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.513e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.983e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)8.422e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.256e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.892e-14
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)9.638e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.477e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.201e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.201e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.201e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.201e-12
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)1.722e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.828e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.165e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.95e-11
Glyma.13G202000 hypothetical protein NA 1Chr13:31566728–31571708 (-)4.999e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.874e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.875e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.874e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.994e-15
Glyma.13G204000 hypothetical protein AT3G12650:AT3G12650:uncharacterized protein 1Chr13:31799233–31800440 (+)3.66e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)6.753e-11
Glyma.13G238400 hypothetical protein AT3G46930:AT3G46930:Protein kinase superfamily protein__AT5G58950:AT5G58950:Protein kinase superfamily protein 1Chr13:34872388–34881743 (-)3.021e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.221e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.07e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.255e-15
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)5.897e-13
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)5.897e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.363e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)9.536e-12
Glyma.16G219000 hypothetical protein NA 1Chr16:37634112–37638596 (-)9.064e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)5.457e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.213e-11