Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30558

Metabolite ID
P30558
Deionized mass
154.0992 Da
Average m/z
155.1061
Average RT
16.0725
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)3.516e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.199e-14
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.058e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)9.417e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.844e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.222e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.276e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.55e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.822e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.157e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.377e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.07e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.894e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.831e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.48e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.191e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.832e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)9.166e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.401e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)3.014e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)7.665e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.795e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.703e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.629e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.629e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.629e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.629e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.322e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.088e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)7.896e-12
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)4.53e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.705e-17
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.723e-16
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.723e-16
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.723e-16
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.723e-16
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)2.246e-12
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)7.684e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.43e-11
Glyma.13G202000 hypothetical protein NA 1Chr13:31566728–31571708 (-)8.827e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.668e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.668e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.691e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.573e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.476e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.004e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.584e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.643e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.798e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.461e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.905e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.271e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.271e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.473e-12