Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30555

Metabolite ID
P30555
Deionized mass
391.6938 Da
Average m/z
392.7017
Average RT
16.0723
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G188300 hypothetical protein NA 4Chr02:35008552–35027979 (-)3.735e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.106e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.877e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)9.575e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)2.994e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.412e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)3.592e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)3.592e-11
Glyma.02G186700 hypothetical protein AT2G41530:SFGH:S-formylglutathione hydrolase 1Chr02:34053264–34063869 (+)8.459e-12
Glyma.02G186800 hypothetical protein AT5G20950:AT5G20950:Glycosyl hydrolase family protein 1Chr02:34273084–34276697 (+)8.459e-12
Glyma.02G187900 hypothetical protein NA 1Chr02:34766792–34767584 (-)8.459e-12
Glyma.02G188000 hypothetical protein NA 1Chr02:34824517–34828786 (+)8.459e-12
Glyma.02G189300 hypothetical protein NA 1Chr02:35303379–35311640 (+)8.459e-12
Glyma.02G189700 hypothetical protein NA 1Chr02:35649728–35657614 (-)8.459e-12
Glyma.02G191500 hypothetical protein AT3G10160:DFC:DHFS-FPGS homolog C 1Chr02:36167451–36184853 (-)8.459e-12
Glyma.02G192500 hypothetical protein AT5G26760:AT5G26760:RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein 1Chr02:36409869–36415210 (+)3.224e-11
Glyma.02G193000 hypothetical protein AT5G06410:AT5G06410:DNAJ heat shock N-terminal domain-containing protein 1Chr02:36477679–36480986 (-)3.224e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)9.351e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.83e-12
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)1.268e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.106e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.74e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.253e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.597e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.597e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.597e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)8.811e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.412e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.415e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.044e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.996e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.996e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.233e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.486e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.761e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.283e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.276e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)8.59e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.589e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)8.084e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.701e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.066e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.284e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.328e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.175e-14
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.646e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.629e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.265e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.265e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.265e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.265e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.809e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.844e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.071e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.24e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)3.938e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)3.44e-13
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)9.549e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)3.081e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.157e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)5.549e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.181e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.181e-11
Glyma.13G060200 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 1Chr13:15749985–15754961 (+)2.462e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.489e-11
Glyma.13G182200 hypothetical protein AT3G45100:SETH2:UDP-Glycosyltransferase superfamily protein 1Chr13:29529252–29533936 (+)1.239e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.688e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)4.76e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)9.911e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.578e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.885e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.885e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.044e-15
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)9.65e-11
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)4.59e-12