Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30493

Metabolite ID
P30493
Deionized mass
1135.5409 Da
Average m/z
1136.5598
Average RT
16.0537
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.015e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.096e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)9.927e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.927e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.162e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.127e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.852e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)7.604e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.154e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.113e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.113e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.711e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.89e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.614e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.987e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.341e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.131e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.523e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.558e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.051e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.992e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.346e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.346e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.927e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.927e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)9.623e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.927e-12
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)5.344e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.88e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.05e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.64e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.83e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.499e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.499e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.346e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.158e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.158e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.158e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.436e-11
Glyma.13G187100 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr13:30076949–30095359 (-)4.363e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.137e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.571e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.512e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.761e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.777e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.127e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.91e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.955e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.251e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.358e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.828e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.658e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.052e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.852e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.692e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.456e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)2.328e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)9.024e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)9.024e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)9.024e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.96e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.125e-11