Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30354

Metabolite ID
P30354
Deionized mass
593.7663 Da
Average m/z
594.7748
Average RT
16.0124
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 4Chr03:2202325–2234931 (+)3.597e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.729e-16
Glyma.18G059600 hypothetical protein NA 3Chr18:5283311–5291592 (+)5.853e-11
Glyma.18G063200 hypothetical protein NA 2Chr18:5779244–5784529 (+)4.466e-12
Glyma.18G063400 hypothetical protein AT2G29940:ABCG31:pleiotropic drug resistance 3 2Chr18:5796259–5805903 (-)4.466e-12
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.204e-11
Glyma.02G044400 hypothetical protein NA 1Chr02:4121809–4127068 (+)2.748e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.855e-12
Glyma.06G275900 hypothetical protein NA 1Chr06:46685943–46689788 (-)7.934e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.757e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.445e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.757e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.757e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.445e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.909e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.14e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)5.02e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.729e-16
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.699e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.735e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.735e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.735e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.627e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.509e-11
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr16:7255773–7261809 (+)2.732e-11
Glyma.18G055300 PER1 peroxidase NA 1Chr18:4805286–4809267 (-)5.853e-11
Glyma.18G059000 hypothetical protein NA 1Chr18:5221254–5226837 (-)5.853e-11
Glyma.18G059100 hypothetical protein NA 1Chr18:5227760–5229525 (+)5.853e-11
Glyma.18G059200 hypothetical protein AT5G58530:AT5G58530:Glutaredoxin family protein 1Chr18:5233333–5238882 (+)5.853e-11
Glyma.18G059800 hypothetical protein AT2G30100:AT2G30100:pentatricopeptide (PPR) repeat-containing protein 1Chr18:5303044–5306448 (-)5.853e-11
Glyma.18G060700 hypothetical protein AT1G07120:AT1G07120:CHUP1-like protein 1Chr18:5471610–5474303 (-)5.853e-11
Glyma.18G060900 hypothetical protein AT2G30040:MAPKKK14:mitogen-activated protein kinase kinase kinase 14 1Chr18:5486854–5488508 (-)5.853e-11
Glyma.18G061100 AS1 asparagine synthetase 1 AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr18:5539339–5544439 (+)5.853e-11
Glyma.18G062800 hypothetical protein NA 1Chr18:5752483–5753187 (+)4.466e-12
Glyma.18G064000 hypothetical protein AT1G07230:NPC1:non-specific phospholipase C1 1Chr18:5847976–5851846 (-)4.466e-12
Glyma.18G064700 hypothetical protein AT5G58930:AT5G58930:__AT3G46990:AT3G46990:DUF740 family protein, putative (DUF740) 1Chr18:5893632–5895734 (+)4.466e-12
Glyma.18G065700 hypothetical protein AT2G29630:THIC:thiaminC 1Chr18:6008424–6016165 (+)4.466e-12
Glyma.18G066700 hypothetical protein NA 1Chr18:6155048–6161828 (+)3.254e-11
Glyma.18G066900 hypothetical protein AT2G29680:CDC6:cell division control 6 1Chr18:6167590–6173086 (-)3.254e-11
Glyma.18G067000 hypothetical protein AT2G29890:VLN1:villin-like 1 1Chr18:6185551–6203032 (+)3.254e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)5.022e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.553e-11