Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30337

Metabolite ID
P30337
Deionized mass
144.0402 Da
Average m/z
289.0883
Average RT
16.0071
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.998e-21
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.275e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.675e-11
Glyma.13G053000 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 2Chr13:15046821–15050021 (+)5.03e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.284e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.284e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.241e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)5.988e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.587e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.262e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.68e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.638e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.479e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.155e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.249e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.249e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.249e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.065e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.242e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.242e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.041e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.777e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.147e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)7.165e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)7.165e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.726e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)8.469e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.284e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.173e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.173e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.703e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.703e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.082e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.597e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.597e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.825e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.162e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.918e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.611e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.713e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.277e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.908e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.908e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.342e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.342e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)7e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.536e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.07e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.89e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.08e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.598e-14