Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30301

Metabolite ID
P30301
Deionized mass
446.2158 Da
Average m/z
893.4327
Average RT
15.9983
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)1.759e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.934e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)1.284e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)1.284e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)1.284e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)1.547e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.498e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.254e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)7.014e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.113e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.62e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.195e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.195e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.278e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.606e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)5.171e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)4.844e-11
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)8.353e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.41e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.41e-13
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)2.216e-11
Glyma.08G137800 hypothetical protein AT5G65100:AT5G65100:Ethylene insensitive 3 family protein__AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr08:10565832–10577477 (+)5.324e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.603e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.79e-13
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)6.353e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.362e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.362e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.198e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.198e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.097e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.097e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.041e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.211e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.036e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.722e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.304e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.229e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.071e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.071e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.694e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.694e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)5.16e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.513e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.513e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.161e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.317e-12