Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30014

Metabolite ID
P30014
Deionized mass
902.3593 Da
Average m/z
903.3623
Average RT
15.9216
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 4Chr10:48805999–48811533 (-)2.35e-16
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.007e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.504e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.157e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.021e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)3.803e-12
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)8.547e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.437e-16
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)6.407e-17
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.556e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.556e-11
Glyma.02G112500 hypothetical protein AT1G69400:AT1G69400:Transducin/WD40 repeat-like superfamily protein 1Chr02:10910270–10917963 (-)4.851e-11
Glyma.02G112900 hypothetical protein AT2G03350:AT2G03350:DUF538 family protein (Protein of unknown function, DUF538) 1Chr02:10933057–10936021 (-)4.851e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.088e-14
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.801e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)4.585e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.05e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.393e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.122e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.98e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.927e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.058e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.208e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.652e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)4.235e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.594e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.211e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.536e-14
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.536e-14
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)2.268e-12
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)8.187e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.925e-11
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)9.981e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.047e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.572e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)4.318e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.504e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)9.964e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.761e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.761e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.709e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.709e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.709e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.775e-13
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)1.271e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.3e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.53e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.018e-17
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)6.378e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)8.002e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)8.002e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)8.432e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.374e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.523e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.523e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.523e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.044e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.021e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.231e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.593e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.376e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.593e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.593e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.443e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.187e-12
Glyma.16G002800 hypothetical protein AT4G24290:AT4G24290:MAC/Perforin domain-containing protein 1Chr16:144387–154780 (+)9.485e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.021e-12
Glyma.16G003100 hypothetical protein AT1G09800:AT1G09800:Pseudouridine synthase family protein 1Chr16:169457–172345 (-)9.485e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.021e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.456e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.464e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.091e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.091e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.714e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.127e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.266e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.659e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.267e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.648e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.648e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.834e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)9.57e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)9.569e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.681e-17
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.183e-12
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)7.553e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)6.437e-13
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)1.848e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)7.332e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.636e-17
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)5.94e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.494e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.953e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.187e-11