Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29978

Metabolite ID
P29978
Deionized mass
380.7167 Da
Average m/z
381.7252
Average RT
15.9158
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.712e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)6.196e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)6.196e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.196e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.186e-11
Glyma.01G031900 hypothetical protein AT1G23870:TPS9:trehalose-phosphatase/synthase 9 1Chr01:3342396–3347771 (+)1.496e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)3.709e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.447e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)8.961e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.79e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.393e-12
Glyma.04G235400 hypothetical protein AT3G49260:iqd21:IQ-domain 21 1Chr04:50351726–50356449 (-)5.002e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.785e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.712e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.712e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.712e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.119e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.064e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.196e-16
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.74e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.196e-16
Glyma.08G123100 hypothetical protein AT3G20050:TCP-1:T-complex protein 1 alpha subunit 1Chr08:9468076–9475710 (-)2.984e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.708e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.124e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.853e-12
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)4.693e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)1.664e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.032e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.989e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.989e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.989e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.816e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.816e-11
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)3.628e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.48e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.462e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)8.011e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.533e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.533e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.712e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.869e-14
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)3.61e-11
Glyma.18G267200 hypothetical protein NA 1Chr18:55161119–55166101 (-)1.19e-12
Glyma.18G267300 hypothetical protein NA 1Chr18:55166980–55168397 (+)5.725e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)4.426e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.325e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.932e-12
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)8.343e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)5.03e-11