Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29973

Metabolite ID
P29973
Deionized mass
284.0695 Da
Average m/z
285.0757
Average RT
15.9148
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
105
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

105 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 5Chr16:32076715–32092322 (-)6.241e-15
Glyma.08G237500 AT1G79560 protein AT1G79560:FTSH12:FTSH protease 12 3Chr08:20191321–20257603 (-)2.329e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)6.077e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.343e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.873e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.183e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.722e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.723e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.512e-15
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)1.811e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.814e-13
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.814e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.778e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.347e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)6.924e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)4.147e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.778e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.809e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.33e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.616e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.391e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.61e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.38e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.718e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.943e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.751e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.751e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.751e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.565e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.565e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.947e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.947e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.628e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.806e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.183e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.183e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.183e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.183e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.346e-11
Glyma.08G236300 hypothetical protein NA 1Chr08:19980951–19982026 (-)2.329e-11
Glyma.08G236400 hypothetical protein AT1G56050:AT1G56050:GTP-binding protein-like protein 1Chr08:20009675–20029987 (-)2.329e-11
Glyma.08G236700 hypothetical protein AT1G79090:AT1G79090:topoisomerase II-associated protein 1Chr08:20051144–20053515 (+)2.329e-11
Glyma.08G236800 Conserved telomere maintenance component 1 AT4G09680:CTC1:conserved telomere maintenance component 1 1Chr08:20067579–20081988 (-)2.329e-11
Glyma.08G237200 hypothetical protein AT1G79570:AT1G79570:kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein 1Chr08:20140030–20147276 (+)2.329e-11
Glyma.08G237800 hypothetical protein NA 1Chr08:20272407–20273172 (-)2.329e-11
Glyma.08G238100 hypothetical protein NA 1Chr08:20294013–20296401 (-)2.329e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)2.263e-15
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.929e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.929e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)7.635e-14
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)2.574e-11
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)3.676e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.561e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)9.924e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.109e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.83e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.987e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)5.757e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.466e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.26e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.26e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.26e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.135e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.135e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.63e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.63e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.543e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.25e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.551e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.551e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.722e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.123e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.536e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.94e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.512e-15
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)8.156e-14
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)2.765e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.73e-15
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.024e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.829e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.976e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)1.561e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.912e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.533e-13
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.996e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.594e-15
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.518e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.18e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.18e-12
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.901e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.042e-14
Glyma.16G147900 hypothetical protein NA 1Chr16:30864919–30872425 (+)3.849e-11
Glyma.16G160700 hypothetical protein NA 1Chr16:31986544–31990022 (+)8.24e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.057e-11
Glyma.16G161000 hypothetical protein NA 1Chr16:32027849–32031609 (-)1.163e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.445e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)3.993e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.904e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.904e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)6.811e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)6.811e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.009e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.366e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.114e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.189e-13