Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29961

Metabolite ID
P29961
Deionized mass
782.2935 Da
Average m/z
783.3018
Average RT
15.9124
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)3.394e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.778e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)5.106e-12
Glyma.02G143200 hypothetical protein AT3G54560:HTA11:histone H2A 11__AT4G13570:HTA4:histone H2A 4 1Chr02:14770876–14772613 (+)6.925e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.908e-12
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)8.805e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.761e-11
Glyma.05G004600 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr05:398853–402990 (-)5.16e-12
Glyma.05G206200 hypothetical protein AT1G63410:AT1G63410:LURP-one-like protein (DUF567) 1Chr05:38904753–38908922 (-)8.585e-11
Glyma.05G207900 hypothetical protein AT4G11450:AT4G11450:bromo-adjacent domain protein, putative (DUF3527) 1Chr05:39000306–39005331 (+)1.495e-11
Glyma.05G208000 hypothetical protein NA 1Chr05:39007106–39011525 (-)1.495e-11
Glyma.05G208100 hypothetical protein AT1G63640:AT1G63640:P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-co… 1Chr05:39013785–39022216 (-)1.495e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.386e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)3.084e-12
Glyma.07G133000 hypothetical protein NA 1Chr07:15744395–15749808 (+)4.095e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.144e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.767e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.137e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.632e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)5.492e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.867e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.867e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.867e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.867e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.501e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)6.06e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.494e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.986e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.732e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.605e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.778e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.285e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.537e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.776e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.776e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)4.558e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)4.558e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.711e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)2.745e-16
Glyma.20G019900 hypothetical protein NA 1Chr20:2058888–2064537 (+)2.149e-12