Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29877

Metabolite ID
P29877
Deionized mass
786.1970 Da
Average m/z
787.2072
Average RT
15.8947
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 5Chr16:35841279–35846894 (-)2.757e-14
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)6.931e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.352e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)4.18e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)4.447e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)6.931e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.423e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)4.526e-12
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)2.952e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.687e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.413e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.413e-13
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)6.011e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.37e-16
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.236e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.74e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.127e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.878e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.413e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.352e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.617e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.617e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.988e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.543e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.543e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.543e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.931e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.931e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.585e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.931e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.715e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.715e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.249e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.169e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.706e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.706e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.895e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.764e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.764e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.764e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.764e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.408e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.408e-11
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)7.19e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.505e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.423e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.695e-11
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)3.903e-11
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)4.261e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.639e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.17e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.517e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)9.206e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)2.558e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)3.016e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.769e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)4.18e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.481e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.598e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.598e-11