Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29717

Metabolite ID
P29717
Deionized mass
424.1685 Da
Average m/z
425.1754
Average RT
15.8521
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.704e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)4.537e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.453e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.118e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.904e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.257e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)5.468e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.704e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.567e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)2.176e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.043e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.626e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.687e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.444e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.351e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.335e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.873e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.397e-15
Glyma.06G260200 hypothetical protein AT1G60690:AT1G60690:NAD(P)-linked oxidoreductase superfamily protein__AT1G60710:ATB2:NAD(P)-linked oxidoreductase super… 1Chr06:44529441–44533552 (-)9.215e-12
Glyma.06G260300 hypothetical protein AT1G60730:AT1G60730:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:44535490–44539648 (-)9.215e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.147e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.361e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.118e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.118e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.118e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.118e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.25e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.989e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.37e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.141e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.332e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.332e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.332e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.332e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.63e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.63e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.194e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.454e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.454e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.454e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.992e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.09e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.257e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.738e-13
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)7.946e-12
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.529e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.109e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.859e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.762e-14