Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29712

Metabolite ID
P29712
Deionized mass
836.2203 Da
Average m/z
837.2280
Average RT
15.8500
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.707e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.335e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.335e-11
Glyma.13G183400 hypothetical protein NA 2Chr13:29666942–29670201 (+)8.722e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.735e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.683e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.044e-12
Glyma.01G165400 hypothetical protein AT4G36000:AT4G36000:Pathosis-related thaumatin superfamily protein 1Chr01:50285851–50288150 (-)4.895e-11
Glyma.01G165600 hypothetical protein NA 1Chr01:50305165–50307365 (-)8.406e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.744e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.105e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.471e-14
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)7.702e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.556e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.935e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.346e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.346e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.346e-15
Glyma.06G113100 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr06:9197790–9199755 (-)4.997e-11
Glyma.06G113300 hypothetical protein AT1G21810:AT1G21810:filament-like protein (DUF869) 1Chr06:9206753–9210941 (+)4.997e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.811e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.811e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.481e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.481e-11
Glyma.06G308800 hypothetical protein AT1G08470:SSL3:strictosidine synthase-like 3__AT5G22020:AT5G22020:Calcium-dependent phosphotriesterase superfamily prot… 1Chr06:49739828–49743086 (-)5.155e-11
Glyma.06G309400 hypothetical protein AT5G07040:AT5G07040:RING/U-box superfamily protein 1Chr06:49792092–49792649 (+)6.595e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.153e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.987e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)3.351e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.471e-11
Glyma.11G095000 hypothetical protein NA 1Chr11:7206492–7209711 (-)4.52e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.033e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.485e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.485e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.485e-12
Glyma.12G033700 hypothetical protein AT4G34830:MRL1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr12:2533993–2544977 (+)4.044e-11
Glyma.12G035600 hypothetical protein AT5G45600:GAS41:YEATS family protein 1Chr12:2597690–2600977 (+)1.09e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.211e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.211e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.739e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.739e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.421e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.42e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.335e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)8.307e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.814e-13
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)3.391e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)5.078e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)5.078e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.528e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)1.663e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)1.663e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.753e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.556e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.465e-17
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.583e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.212e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.157e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.157e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.14e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.368e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.66e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.646e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.015e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.015e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.845e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.68e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.519e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)4.569e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)6.542e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.197e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.456e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.237e-11