Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29680

Metabolite ID
P29680
Deionized mass
619.7957 Da
Average m/z
620.8064
Average RT
15.8424
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)6.236e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.177e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.386e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)9.167e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)1.445e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.514e-13
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)8.21e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.57e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.79e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.13e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.431e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.431e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.431e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.454e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.832e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.661e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)6.637e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)6.637e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.315e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.499e-11
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 1Chr11:1048122–1055388 (+)5.114e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.137e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.85e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.85e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.85e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.85e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.534e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.534e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.534e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)4.323e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.749e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.749e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.749e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.924e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.47e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)2.892e-12
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)2.052e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)1.412e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.265e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.183e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.265e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.265e-11
Glyma.16G093700 hypothetical protein NA 1Chr16:15100987–15107038 (+)9.379e-12
Glyma.16G093800 hypothetical protein NA 1Chr16:15144247–15160454 (-)9.379e-12
Glyma.16G094200 hypothetical protein NA 1Chr16:15770075–15772475 (-)9.379e-12
Glyma.16G094300 hypothetical protein AT5G44650:CEST:death domain associated protein 1Chr16:15796268–15811033 (-)9.379e-12
Glyma.16G094500 hypothetical protein AT1G30825:DIS2:Arp2/3 complex, 34 kD subunit p34-Arc 1Chr16:15914865–15930406 (-)9.379e-12
Glyma.16G095100 hypothetical protein AT1G32080:LrgB:uncharacterized protein 1Chr16:16891012–16896814 (-)9.379e-12
Glyma.16G095200 hypothetical protein AT2G35530:bZIP16:basic region/leucine zipper transcription factor 16 1Chr16:16911412–16924907 (-)9.379e-12
Glyma.16G096000 Site-2 protease AT4G20310:AT4G20310:Peptidase M50 family protein 1Chr16:17694666–17720668 (+)9.379e-12
Glyma.16G096600 hypothetical protein AT5G58140:PHOT2:phototropin 2 1Chr16:18621149–18647713 (-)9.379e-12
Glyma.16G096900 hypothetical protein AT1G68690:PERK9:Protein kinase superfamily protein 1Chr16:18767931–18777350 (-)9.379e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)8.848e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.368e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.552e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.552e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.654e-11