Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29668

Metabolite ID
P29668
Deionized mass
268.1638 Da
Average m/z
269.1707
Average RT
15.8407
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.307e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.297e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.297e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.297e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.605e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.531e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.531e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)7.608e-14
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)1.153e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)6.126e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.038e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.9e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)4.898e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.181e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.513e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)3.105e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.683e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.41e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.41e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.41e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.41e-11
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)1.731e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.862e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.455e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.563e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.659e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)7.563e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.297e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.297e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.297e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.297e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.297e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.256e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.361e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.36e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.611e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.611e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.605e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.057e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.057e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.057e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.418e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.388e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.836e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.341e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.075e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.048e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.697e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.563e-12