Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29602

Metabolite ID
P29602
Deionized mass
276.0832 Da
Average m/z
277.0901
Average RT
15.8257
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.409e-14
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 4Chr19:5178930–5212367 (+)2.836e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.21e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.803e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.409e-14
Glyma.19G033700 hypothetical protein AT3G02320:AT3G02320:N2,N2-dimethylguanosine tRNA methyltransferase__AT5G15810:AT5G15810:tRNA (guanine(26)-N(2))-dimethy… 2Chr19:4332261–4339570 (+)2.371e-13
Glyma.19G039200 hypothetical protein NA 2Chr19:5581743–5589236 (+)9.16e-12
Glyma.19G041000 hypothetical protein NA 2Chr19:5964641–5965947 (-)9.676e-14
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.793e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.35e-13
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.449e-11
Glyma.03G148900 hypothetical protein NA 1Chr03:36449311–36451278 (+)1.755e-11
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)5.521e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.367e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.078e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.039e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.058e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.58e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.292e-17
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.084e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.084e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.084e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.084e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.215e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.09e-16
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.196e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.803e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.43e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.024e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.193e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.054e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.82e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.116e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)2.064e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.23e-11
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)6.91e-11
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)3.272e-12
Glyma.19G033800 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 1Chr19:4352324–4355794 (-)2.371e-13
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)2.836e-15
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)2.836e-15
Glyma.19G038100 hypothetical protein NA 1Chr19:5350324–5355097 (+)3.701e-13
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)2.836e-15
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)2.836e-15
Glyma.19G038800 hypothetical protein NA 1Chr19:5452151–5457668 (-)5.25e-11
Glyma.19G039100 hypothetical protein NA 1Chr19:5535436–5544281 (+)9.16e-12
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)9.676e-14
Glyma.19G040700 hypothetical protein NA 1Chr19:5843994–5848776 (-)9.16e-12