Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29498

Metabolite ID
P29498
Deionized mass
696.2860 Da
Average m/z
697.2874
Average RT
15.8072
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.404e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)1.36e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.349e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)3.876e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)9.174e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)5.388e-13
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.952e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.017e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)8.786e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.434e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.307e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)5.66e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.628e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.185e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.75e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.798e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.798e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.535e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.783e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.783e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.783e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.791e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.759e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.447e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.878e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.878e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.878e-14
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.643e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.643e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.714e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.714e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.763e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.994e-14
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.994e-14
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.203e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.818e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.735e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.002e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.002e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.867e-14
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)1.505e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)1.504e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.266e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.831e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.831e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.42e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.42e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.42e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)6.405e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)7.689e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.42e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.349e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.842e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.842e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.842e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.165e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.209e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.605e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.098e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.345e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.367e-13
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)3.876e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)4.189e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)4.189e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.653e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.219e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.222e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.463e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.346e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.072e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.006e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.54e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)1.564e-11