Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29470

Metabolite ID
P29470
Deionized mass
654.1602 Da
Average m/z
655.1654
Average RT
15.8014
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122200 hypothetical protein NA 3Chr08:9416766–9429995 (-)3.288e-14
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)3.288e-14
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)1.688e-11
Glyma.08G122600 hypothetical protein NA 2Chr08:9445153–9450502 (+)5.02e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.497e-11
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 2Chr20:1840259–1844405 (-)9.885e-12
Glyma.20G019300 hypothetical protein AT2G35110:GRL:transcription activator 2Chr20:1999216–2021765 (-)4.965e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 2Chr20:34467936–34475476 (-)7.796e-15
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.848e-15
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)3.403e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)5.915e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.354e-11
Glyma.03G243100 hypothetical protein AT4G18300:AT4G18300:Trimeric LpxA-like enzyme__AT3G02270:AT3G02270:Trimeric LpxA-like enzyme__AT2G34970:AT2G34970:Trime… 1Chr03:44085577–44095075 (+)5.68e-11
Glyma.03G243800 hypothetical protein AT3G05090:LRS1:Transducin/WD40 repeat-like superfamily protein 1Chr03:44148179–44158527 (-)7.7e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.648e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.571e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.959e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.959e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.066e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.512e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.512e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.512e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.073e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.242e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.492e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.492e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.771e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)9.856e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)4.5e-11
Glyma.06G309100 hypothetical protein NA 1Chr06:49771514–49774691 (+)4.514e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)5.466e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.288e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.288e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.288e-14
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.425e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.565e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)9.81e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.095e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.095e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.472e-11
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)9.947e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)4.009e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.517e-12
Glyma.20G053000 hypothetical protein NA 1Chr20:11983566–11990328 (-)7.473e-12
Glyma.20G053100 Early nodulin-like protein 20 AT2G27035:ENODL20:early nodulin-like protein 20 1Chr20:12015196–12015822 (-)7.473e-12
Glyma.20G053200 hypothetical protein AT5G21060:AT5G21060:Glyceraldehyde-3-phosphate dehydrogenase-like family protein 1Chr20:12030619–12040081 (-)7.473e-12
Glyma.20G053500 hypothetical protein AT2G27110:FRS3:FAR1-related sequence 3 1Chr20:12277793–12295586 (+)7.473e-12
Glyma.20G053700 hypothetical protein NA 1Chr20:12341598–12348808 (+)7.473e-12
Glyma.20G054000 hypothetical protein NA 1Chr20:12411805–12423973 (-)7.473e-12
Glyma.20G057400 hypothetical protein NA 1Chr20:16684534–16688382 (+)7.473e-12
Glyma.20G098100 hypothetical protein AT1G56420:AT1G56420:antigenic heat-stable protein 1Chr20:34134555–34139100 (-)7.305e-13
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)8.044e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.162e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.743e-21
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)1.688e-13