Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29311

Metabolite ID
P29311
Deionized mass
507.1917 Da
Average m/z
508.1993
Average RT
15.7536
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
77
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

77 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.83e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.582e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.726e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.039e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.04e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.04e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.604e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.784e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.094e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.007e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.532e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.698e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.406e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.485e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.193e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.193e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.822e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.305e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.305e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.305e-14
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)5.008e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.205e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.893e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.314e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.85e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.403e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.749e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.044e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.545e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.545e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)7.481e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.471e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.67e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.471e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.471e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.67e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.726e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.726e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.726e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.726e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.884e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.04e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.04e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.04e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.04e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.04e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.683e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.683e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.683e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.683e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.116e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.047e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.048e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.047e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.52e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.784e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.48e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.48e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.977e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.976e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.977e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.735e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.276e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.83e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.83e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.83e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.83e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.86e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.781e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.09e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.763e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.312e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.524e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)9.232e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.614e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.428e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.667e-11